JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM16_chr17_15622966_15689311	0/0	t0014	1664	2	0	0	2	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0015	1665	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0016	1665	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0017	1664	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0018	1664	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0019	1665	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0020	1665	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0021	1664	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0022	1664	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0023	1664	1	0	1	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0024	1664	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0025	1664	1	0	0	0	0	1	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0026	1664	1	0	0	1	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0027	1664	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM16_chr17_15622966_15689311	0/0	t0028	1665	1	1	0	0	0	0	copy fasta	TRIM16	chr17	15622966	15689311
TRIM17_chr1_228402935_228421861	1/0	t0001	631	272	30	63	129	12	37	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/1	t0002	631	136	67	7	56	2	3	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	t0003	507	1	0	0	1	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	t0004	631	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	t0005	631	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM17_chr1_228402935_228421861	0/0	t0006	631	1	1	0	0	0	0	copy fasta	TRIM17	chr1	228402935	228421861
TRIM21_chr11_4379897_4398702	1/0	t0001	508	239	62	53	83	13	27	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0002	508	89	0	10	72	2	5	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/1	t0003	508	45	10	9	20	0	5	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0004	508	42	3	8	26	3	2	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0005	508	25	0	0	17	0	8	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0006	508	14	1	2	9	0	2	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0007	508	6	6	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0008	508	5	4	1	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0009	508	3	2	1	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0010	508	2	2	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0011	508	2	2	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0012	508	2	2	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0013	508	1	0	0	1	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0014	508	1	1	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0015	508	1	0	0	0	0	1	copy fasta	TRIM21	chr11	4379897	4398702
TRIM21_chr11_4379897_4398702	0/0	t0016	508	1	1	0	0	0	0	copy fasta	TRIM21	chr11	4379897	4398702
TRIM22_chr11_5684790_5715863	1/1	t0001	1392	205	32	44	81	18	28	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0002	1392	167	29	28	100	0	10	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0003	1391	55	8	2	43	0	2	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0004	1392	12	4	3	0	0	5	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0005	1392	9	9	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0006	1392	9	8	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0007	1392	4	0	3	0	0	1	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0008	1392	3	2	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0009	1392	2	0	0	2	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0010	1392	2	0	0	0	0	2	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0011	1391	2	2	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0012	1392	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0013	1392	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863