JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM22_chr11_5684790_5715863	0/0	t0014	1392	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0015	1392	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0016	1391	1	0	0	1	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0017	1392	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0018	1392	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0019	1392	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0020	1391	1	0	1	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM22_chr11_5684790_5715863	0/0	t0021	1392	1	1	0	0	0	0	copy fasta	TRIM22	chr11	5684790	5715863
TRIM23_chr5_65584690_65629333	1/0	t0001	2139	128	21	26	61	7	12	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0002	2144	47	1	7	23	6	10	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0003	2142	37	13	8	10	3	3	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0004	2152	15	4	4	6	0	1	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0005	2144	14	8	2	4	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0006	2153	12	3	2	2	0	5	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0007	2141	10	6	0	2	0	2	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0008	2154	10	3	2	3	0	2	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0009	2146	9	0	5	2	0	2	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0010	2146	7	7	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/1	t0011	2155	7	1	1	3	0	1	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0012	2158	7	2	3	2	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0013	2145	5	5	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0014	2156	4	1	1	2	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0015	2157	4	0	0	4	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0016	2162	4	0	0	4	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0017	2138	3	0	1	2	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0018	2143	3	3	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0019	2150	3	3	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0020	2150	3	0	1	1	0	1	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0021	2159	3	2	1	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0022	2140	2	0	1	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0023	2142	2	0	0	2	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0024	2142	2	0	2	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0025	2151	2	0	0	2	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0026	2153	2	0	0	2	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0027	2161	2	2	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0028	2139	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0029	2138	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0030	2139	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0031	2142	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0032	2142	1	0	1	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0033	2144	1	0	0	0	0	1	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0034	2144	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0035	2147	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0036	2148	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0037	2148	1	0	1	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0038	2149	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0039	2149	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0040	2151	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0041	2154	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0042	2153	1	0	1	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333