JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM23_chr5_65584690_65629333	0/0	t0043	2153	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0044	2154	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0045	2157	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0046	2156	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0047	2160	1	0	0	1	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0048	2163	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0049	2165	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0050	2168	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0051	2170	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM23_chr5_65584690_65629333	0/0	t0052	2138	1	1	0	0	0	0	copy fasta	TRIM23	chr5	65584690	65629333
TRIM24_chr7_138455259_138594996	0/0	t0001	5332	84	6	15	54	2	7	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0002	5336	69	7	6	45	2	9	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/1	t0003	5335	33	12	14	0	1	5	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0004	5336	15	1	5	1	2	6	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0005	5331	7	0	0	5	0	2	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0006	5336	7	7	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0007	5336	6	0	0	6	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0008	5335	5	4	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0009	5335	5	0	4	0	0	1	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0010	5335	5	5	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0011	5335	5	2	0	0	0	3	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0012	5336	4	2	1	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0013	5339	3	3	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0014	5336	3	3	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0015	5336	3	2	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0016	5335	3	2	0	0	0	1	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0017	5340	3	3	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0018	5336	3	3	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0019	5335	2	2	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0020	5336	2	0	2	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0021	5337	2	1	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0022	5336	2	2	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0023	5336	2	0	0	0	0	2	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0024	5336	2	2	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0025	5337	2	0	0	2	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0026	5336	2	2	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0027	5332	2	0	0	0	0	2	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0028	5335	1	0	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0029	5336	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0030	5335	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0031	5337	1	0	0	0	0	1	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0032	5336	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0033	5336	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0034	5335	1	0	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0035	5336	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0036	5337	1	0	0	0	1	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0037	5332	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0038	5336	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0039	5335	1	0	0	0	0	1	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0040	5336	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996