JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM24_chr7_138455259_138594996	0/0	t0041	5333	1	0	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0042	5337	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0043	5332	1	0	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0044	5335	1	0	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0045	5336	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0046	5336	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0047	5340	1	0	1	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0048	5336	1	0	0	0	0	1	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0049	5332	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0050	5332	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0051	5332	1	0	0	0	0	1	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0052	5332	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	1/0	t0053	5336	1	0	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0054	5331	1	0	0	1	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0055	5340	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0056	5335	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0057	5335	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM24_chr7_138455259_138594996	0/0	t0058	5336	1	1	0	0	0	0	copy fasta	TRIM24	chr7	138455259	138594996
TRIM25_chr17_56882909_56919049	1/0	t0001	3853	189	19	22	114	3	30	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0002	3852	73	24	17	21	4	7	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/1	t0003	3852	43	6	24	3	5	4	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0004	3853	13	6	4	1	0	2	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0005	3853	8	8	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0006	3852	5	3	1	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0007	3852	4	4	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0008	3853	4	1	0	0	3	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0009	3853	4	0	0	4	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0010	3852	3	3	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0011	3852	3	3	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0012	3853	3	1	1	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0013	3856	2	2	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0014	3852	2	0	2	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0015	3853	2	0	0	2	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0016	3857	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0017	3853	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0018	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0019	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0020	3853	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0021	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0022	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0023	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0024	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0025	3853	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0026	3853	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0027	3853	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0028	3852	1	0	0	0	1	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0029	3852	1	0	1	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0030	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0031	3852	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0032	3852	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049