JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM25_chr17_56882909_56919049	0/0	t0033	3853	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0034	3853	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0035	3853	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0036	3853	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0037	3853	1	1	0	0	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0038	3853	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0039	3852	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0040	3852	1	0	0	1	0	0	copy fasta	TRIM25	chr17	56882909	56919049
TRIM25_chr17_56882909_56919049	0/0	t0041	3853	1	0	0	0	0	1	copy fasta	TRIM25	chr17	56882909	56919049
TRIM26_chr6_30179455_30218406	0/0	t0001	1899	140	41	33	56	2	8	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0002	1899	83	0	9	62	3	9	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0003	1899	53	2	16	29	3	3	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/1	t0004	1899	47	2	4	26	5	9	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0005	1899	32	18	3	2	0	9	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0006	1899	21	0	0	21	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0007	1899	17	9	6	0	2	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0008	1899	12	9	1	0	0	2	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0009	1898	8	0	3	0	0	5	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0010	1899	6	2	3	0	1	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0011	1899	5	4	1	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0012	1899	2	0	0	0	0	2	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0013	1899	2	1	1	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0014	1899	2	2	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0015	1899	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0016	1899	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0017	1899	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0018	1899	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0019	1899	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0020	1899	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0021	1898	1	0	0	0	0	1	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0022	1899	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0023	1899	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0024	1899	1	0	0	1	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM26_chr6_30179455_30218406	0/0	t0025	1899	1	1	0	0	0	0	copy fasta	TRIM26	chr6	30179455	30218406
TRIM27_chr6_28898002_28928985	0/1	t0001	1422	196	55	28	87	7	18	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0002	1422	135	16	32	60	7	20	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0003	1422	55	13	9	29	2	2	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0004	1421	6	6	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0005	1422	4	4	0	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0006	1422	4	0	0	2	0	2	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0007	1422	3	2	1	0	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0008	1422	2	0	0	2	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0009	1422	1	0	0	0	0	1	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0010	1422	1	0	0	1	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0011	1422	1	0	0	1	0	0	copy fasta	TRIM27	chr6	28898002	28928985
TRIM27_chr6_28898002_28928985	0/0	t0012	1422	1	0	0	0	0	1	copy fasta	TRIM27	chr6	28898002	28928985
TRIM28_chr19_58539064_58555715	1/1	t0001	857	349	52	68	172	17	38	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0002	857	29	25	1	2	0	1	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0003	858	5	4	1	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0004	857	4	3	1	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715