JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM28_chr19_58539064_58555715	0/0	t0005	862	3	3	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0006	857	2	2	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0007	857	2	2	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0008	857	1	1	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0009	857	1	0	0	1	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0010	857	1	0	0	1	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0011	857	1	1	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0012	857	1	0	1	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0013	857	1	1	0	0	0	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0014	857	1	0	0	0	1	0	copy fasta	TRIM28	chr19	58539064	58555715
TRIM28_chr19_58539064_58555715	0/0	t0015	857	1	0	0	0	0	1	copy fasta	TRIM28	chr19	58539064	58555715
TRIM29_chr11_120106286_120143113	1/1	t0001	1211	379	82	72	163	14	46	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0002	1211	6	6	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0003	1211	3	3	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0004	1211	2	0	0	2	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0005	1211	2	2	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0006	1211	1	0	0	1	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0007	1211	1	1	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0008	1211	1	1	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0009	1211	1	0	0	1	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0010	1211	1	1	0	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0011	1211	1	0	0	1	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0012	1211	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM29_chr11_120106286_120143113	0/0	t0013	1211	1	0	1	0	0	0	copy fasta	TRIM29	chr11	120106286	120143113
TRIM2_chr4_153199443_153344317	1/1	t0001	4440	86	12	24	31	4	13	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0002	4441	47	15	6	16	2	8	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0003	4442	47	17	12	12	3	3	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0004	4441	15	10	1	1	0	3	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0005	4441	11	0	0	8	0	3	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0006	4444	9	8	1	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0007	4443	7	2	3	1	1	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0008	4442	7	0	0	7	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0009	4443	3	3	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0010	4443	3	3	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0011	4444	3	3	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0012	4440	3	0	0	3	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0013	4444	2	2	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0014	4446	2	2	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0015	4439	2	0	2	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0016	4441	2	0	0	2	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0017	4443	2	0	0	0	0	2	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0018	4442	2	2	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0019	4440	1	0	0	1	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0020	4440	1	0	1	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0021	4441	1	0	0	1	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0022	4440	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0023	4441	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0024	4444	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0025	4442	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0026	4443	1	0	0	0	0	1	copy fasta	TRIM2	chr4	153199443	153344317