JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM2_chr4_153199443_153344317	0/0	t0027	4445	1	0	0	0	1	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0028	4442	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0029	4446	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0030	4440	1	0	0	1	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0031	4440	1	0	0	0	1	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0032	4440	1	0	0	0	0	1	copy fasta	TRIM2	chr4	153199443	153344317
TRIM2_chr4_153199443_153344317	0/0	t0033	4442	1	1	0	0	0	0	copy fasta	TRIM2	chr4	153199443	153344317
TRIM31_chr6_30097897_30118090	0/0	t0001	750	202	22	28	123	13	16	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0002	750	83	11	35	30	1	6	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/1	t0003	750	66	13	15	26	3	8	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0004	750	36	11	0	21	0	4	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0005	750	14	0	3	0	1	10	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0006	750	14	12	0	1	0	1	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0007	750	12	8	1	0	0	3	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0008	750	4	4	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0009	750	3	3	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0010	750	2	2	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0011	750	2	1	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0012	750	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0013	750	1	0	0	1	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0014	750	1	0	1	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0015	750	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0016	750	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0017	750	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM31_chr6_30097897_30118090	0/0	t0018	750	1	1	0	0	0	0	copy fasta	TRIM31	chr6	30097897	30118090
TRIM32_chr9_116682305_116706299	0/1	t0001	1754	308	79	37	146	13	32	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0002	1754	112	4	34	67	1	6	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	1/0	t0003	1754	14	1	4	6	0	2	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0004	1754	5	4	1	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0005	1754	4	3	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0006	1754	2	2	0	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0007	1754	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0008	1754	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0009	1754	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0010	1754	1	0	0	1	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM32_chr9_116682305_116706299	0/0	t0011	1754	1	1	0	0	0	0	copy fasta	TRIM32	chr9	116682305	116706299
TRIM33_chr1_114387790_114516203	1/0	t0001	4986	45	9	14	15	1	5	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0002	4987	37	10	8	13	0	6	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0003	4988	18	0	7	4	1	6	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0004	4987	11	8	2	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0005	4988	10	4	2	0	0	4	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0006	4989	8	6	1	0	1	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0007	4987	6	6	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0008	4986	6	0	6	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0009	4988	4	4	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0010	4987	4	4	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0011	4987	3	2	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0012	4988	3	1	0	2	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0013	4988	3	3	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0014	4988	3	1	0	1	0	1	copy fasta	TRIM33	chr1	114387790	114516203