JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM33_chr1_114387790_114516203	0/0	t0015	4986	3	0	1	0	2	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0016	4985	3	0	0	3	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0017	4988	2	0	0	2	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0018	4989	2	1	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0019	4987	2	0	2	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0020	4987	2	2	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0021	4989	2	0	0	0	0	2	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0022	4986	2	0	0	0	0	2	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0023	4989	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0024	4985	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0025	4989	1	0	0	0	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0026	4989	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0027	4991	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0028	4986	1	0	0	0	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0029	4988	1	0	0	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0030	4988	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0031	4988	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0032	4988	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0033	4988	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0034	4990	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0035	4987	1	0	0	0	1	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0036	4987	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0037	4988	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0038	4987	1	0	0	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0039	4987	1	0	0	0	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0040	4986	1	0	0	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/1	t0041	4986	1	0	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0042	4986	1	0	0	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0043	4987	1	0	0	0	0	1	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0044	4986	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0045	4986	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0046	4988	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0047	4986	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0048	4985	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0049	4988	1	0	1	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0050	4987	1	1	0	0	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM33_chr1_114387790_114516203	0/0	t0051	4987	1	0	0	1	0	0	copy fasta	TRIM33	chr1	114387790	114516203
TRIM34_chr11_5620001_5649398	0/1	t0001	827	386	66	73	186	14	46	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	1/0	t0002	827	37	27	5	0	2	2	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	t0003	827	1	0	0	1	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	t0004	827	1	0	0	1	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM34_chr11_5620001_5649398	0/0	t0005	827	1	1	0	0	0	0	copy fasta	TRIM34	chr11	5620001	5649398
TRIM35_chr8_27279886_27316272	0/0	t0001	2703	146	26	25	75	4	16	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/1	t0002	2701	78	6	31	20	7	13	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0003	2702	36	7	14	9	2	4	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0004	2703	32	1	4	21	1	5	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0005	2701	19	1	0	18	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	1/0	t0006	2702	17	6	0	10	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0007	2704	14	4	2	6	0	2	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0008	2702	9	8	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272