Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTD_chr3_15596745_15658714	0/0	t0060	8395	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0061	8395	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0062	8395	1	0	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0063	8395	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0064	8395	1	0	0	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0065	8395	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0066	8395	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0067	8395	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0068	8393	1	0	0	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0069	8396	1	0	1	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0070	8392	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0071	8393	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0072	8393	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0073	8394	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0074	8394	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0075	8394	1	0	0	0	0	1	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0076	8394	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0077	8398	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0078	8397	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0079	8397	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0080	8395	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0081	8397	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0082	8395	1	0	0	0	1	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0083	8395	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0084	8397	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0085	8395	1	1	0	0	0	0	copy fasta	BTD	chr3	15596745	15658714
BTD_chr3_15596745_15658714	0/0	t0086	8395	1	0	0	1	0	0	copy fasta	BTD	chr3	15596745	15658714
BTF3L4_chr1_52051295_52095716	0/0	t0001	4057	116	16	31	41	9	19	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/1	t0002	4058	27	12	1	9	0	4	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0003	4059	25	24	1	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0004	4059	22	0	4	18	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0005	4057	10	0	0	8	0	2	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0006	4059	10	8	1	0	0	1	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	1/0	t0007	4057	7	5	0	0	0	1	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0008	4061	6	5	1	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0009	4060	5	0	0	5	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0010	4057	5	0	0	5	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0011	4059	4	4	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0012	4060	4	2	2	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0013	4058	3	2	1	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0014	4060	3	0	1	0	1	1	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0015	4057	2	0	2	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0016	4057	2	2	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0017	4057	2	0	0	2	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0018	4058	2	2	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0019	4058	2	2	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0020	4057	2	2	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0021	4058	1	0	0	1	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0022	4059	1	0	0	1	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0023	4059	1	0	0	1	0	0	copy fasta	BTF3L4	chr1	52051295	52095716