JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM35_chr8_27279886_27316272	0/0	t0009	2700	7	6	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0010	2704	4	0	1	3	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0011	2701	4	0	0	4	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0012	2703	4	4	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0013	2701	3	3	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0014	2701	2	1	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0015	2701	2	2	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0016	2701	2	2	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0017	2703	2	1	0	0	0	1	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0018	2703	2	0	0	2	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0019	2702	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0020	2703	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0021	2701	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0022	2702	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0023	2702	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0024	2702	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0025	2703	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0026	2703	1	0	0	0	0	1	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0027	2703	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0028	2701	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0029	2702	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0030	2700	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0031	2701	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0032	2702	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0033	2700	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0034	2701	1	0	0	0	0	1	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0035	2703	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0036	2701	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0037	2700	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0038	2701	1	0	0	0	0	1	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0039	2702	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0040	2703	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0041	2704	1	0	1	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0042	2703	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0043	2701	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0044	2703	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0045	2703	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0046	2703	1	1	0	0	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM35_chr8_27279886_27316272	0/0	t0047	2703	1	0	0	1	0	0	copy fasta	TRIM35	chr8	27279886	27316272
TRIM36_chr5_115119772_115174908	0/1	t0001	2006	222	35	50	95	17	24	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0002	2006	81	3	14	59	0	5	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	1/0	t0003	2006	51	27	2	21	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0004	2006	7	0	0	7	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0005	2001	5	5	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0006	2006	4	4	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0007	2005	4	1	2	0	1	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0008	2006	4	0	0	4	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0009	2006	3	3	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0010	2006	3	1	0	0	0	2	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0011	2006	3	3	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908