JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM36_chr5_115119772_115174908	0/0	t0012	2006	3	0	0	3	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0013	2006	2	2	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0014	2006	2	1	1	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0015	2006	1	0	0	0	0	1	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0016	2001	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0017	2006	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0018	2001	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0019	2006	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0020	2006	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0021	2006	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0022	2006	1	0	1	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0023	2006	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0024	2006	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0025	2006	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0026	2006	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0027	2006	1	0	0	1	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM36_chr5_115119772_115174908	0/0	t0028	2006	1	1	0	0	0	0	copy fasta	TRIM36	chr5	115119772	115174908
TRIM37_chr17_58993202_59111880	1/1	t0001	1595	118	16	31	58	2	9	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0002	1595	100	23	18	41	5	13	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0003	1595	92	39	14	31	2	6	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0004	1594	4	4	0	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0005	1595	4	0	0	4	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0006	1595	4	0	1	0	2	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0007	1595	4	3	1	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0008	1595	3	0	0	3	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0009	1595	3	2	1	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0010	1595	2	2	0	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0011	1595	1	0	0	0	0	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0012	1595	1	0	0	0	1	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0013	1620	1	0	0	0	0	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0014	1595	1	0	0	1	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0015	1595	1	0	0	1	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0016	1595	1	0	0	1	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0017	1595	1	0	0	0	0	1	copy fasta	TRIM37	chr17	58993202	59111880
TRIM37_chr17_58993202_59111880	0/0	t0018	1595	1	1	0	0	0	0	copy fasta	TRIM37	chr17	58993202	59111880
TRIM38_chr6_25957802_25996231	0/0	t0001	8031	46	1	9	34	0	2	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	1/0	t0002	8021	17	1	8	2	2	3	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0003	8035	16	0	5	6	0	5	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0004	8033	10	1	5	2	2	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0005	8033	9	1	5	2	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0006	8017	8	1	0	7	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/1	t0007	8033	8	1	1	1	1	3	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0008	8032	8	1	4	3	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0009	8030	6	6	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0010	8032	6	0	1	3	0	2	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0011	8029	5	5	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0012	8034	5	3	1	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0013	8037	5	0	1	3	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0014	8034	5	0	1	1	0	3	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0015	8032	5	0	1	3	0	1	copy fasta	TRIM38	chr6	25957802	25996231