JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TRIM38_chr6_25957802_25996231	0/0	t0066	8029	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0067	8017	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0068	8030	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0069	8028	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0070	8028	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0071	8018	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0072	8015	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0073	8016	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0074	8020	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0075	8026	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0076	8028	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0077	8025	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0078	8029	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0079	8026	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0080	8027	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0081	8028	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0082	8033	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0083	8022	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0084	8036	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0085	8021	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0086	8035	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0087	8022	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0088	8036	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0089	8028	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0090	8033	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0091	8030	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0092	8030	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0093	8031	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0094	8033	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0095	8030	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0096	8029	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0097	8037	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0098	8034	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0099	8036	1	0	1	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0100	8033	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0101	8035	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0102	8033	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0103	8031	1	1	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0104	8032	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0105	8036	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0106	8036	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0107	8036	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0108	8031	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0109	8032	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0110	8033	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0111	8034	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0112	8031	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0113	8029	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0114	8030	1	0	0	1	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0115	8031	1	0	0	0	1	copy fasta	TRIM38	chr6	25957802	25996231