JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM38_chr6_25957802_25996231	0/0	t0166	8033	1	1	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0167	8032	1	1	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0168	8032	1	1	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0169	8021	1	1	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0170	8032	1	1	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM38_chr6_25957802_25996231	0/0	t0171	8033	1	1	0	0	0	0	copy fasta	TRIM38	chr6	25957802	25996231
TRIM39_chr6_30321927_30348729	0/1	t0001	1700	311	81	52	128	16	33	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0002	1700	97	0	18	70	2	7	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0003	1700	35	2	11	19	0	3	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0004	1700	3	3	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0005	1700	3	1	1	0	0	1	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0006	1700	2	1	1	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0007	1700	2	0	0	0	0	2	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0008	1700	2	2	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0009	1700	1	0	0	1	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0010	1700	1	0	1	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0011	1700	1	0	0	1	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0012	1700	1	0	0	1	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0013	1700	1	1	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM39_chr6_30321927_30348729	0/0	t0014	1700	1	1	0	0	0	0	copy fasta	TRIM39	chr6	30321927	30348729
TRIM3_chr11_6443613_6478941	1/1	t0001	604	269	45	52	128	10	32	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0002	604	45	20	11	4	3	7	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0003	604	41	14	11	5	3	8	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0004	604	20	8	5	4	2	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0005	604	5	5	0	0	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0006	604	2	0	1	0	0	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0007	604	1	0	0	1	0	0	copy fasta	TRIM3	chr11	6443613	6478941
TRIM3_chr11_6443613_6478941	0/0	t0008	604	1	0	0	0	0	1	copy fasta	TRIM3	chr11	6443613	6478941
TRIM40_chr6_30131140_30153728	0/0	t0001	1271	215	30	35	118	12	20	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0002	1271	69	18	9	40	2	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0003	1271	55	5	15	30	3	2	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0004	1271	21	0	6	14	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/1	t0005	1271	16	1	1	6	1	6	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0006	1271	16	14	0	1	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0007	1271	12	12	0	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0008	1271	11	0	8	2	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0009	1271	9	0	3	0	0	6	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0010	1271	8	7	1	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0011	1271	7	0	0	1	0	6	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0012	1271	6	3	1	0	0	2	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0013	1271	2	0	0	2	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0014	1271	2	0	0	2	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0015	1271	2	2	0	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0016	1271	2	1	0	0	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0017	1271	1	0	0	1	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0018	1271	1	0	0	0	0	1	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0019	1271	1	1	0	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0020	1271	1	0	0	1	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0021	1271	1	0	1	0	0	0	copy fasta	TRIM40	chr6	30131140	30153728
TRIM40_chr6_30131140_30153728	0/0	t0022	1271	1	0	0	0	0	1	copy fasta	TRIM40	chr6	30131140	30153728