Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTF3L4_chr1_52051295_52095716	0/0	t0024	4057	1	1	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0025	4057	1	0	0	1	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0026	4057	1	0	0	1	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0027	4057	1	0	1	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0028	4057	1	0	0	0	0	1	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0029	4057	1	1	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0030	4058	1	0	0	0	0	1	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0031	4059	1	1	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0032	4060	1	1	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0033	4061	1	1	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0034	4057	1	0	1	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0035	4057	1	0	1	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0036	4057	1	1	0	0	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3L4_chr1_52051295_52095716	0/0	t0037	4057	1	0	0	1	0	0	copy fasta	BTF3L4	chr1	52051295	52095716
BTF3_chr5_73493442_73510667	1/1	t0001	656	243	35	70	91	8	37	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	t0002	656	155	49	8	85	2	11	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	t0003	656	6	6	0	0	0	0	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	t0004	656	2	2	0	0	0	0	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	t0005	656	1	0	1	0	0	0	copy fasta	BTF3	chr5	73493442	73510667
BTF3_chr5_73493442_73510667	0/0	t0006	656	1	0	1	0	0	0	copy fasta	BTF3	chr5	73493442	73510667
BTG1_chr12_92135278_92150846	0/0	t0001	4115	117	13	31	54	2	17	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	1/0	t0002	4114	59	1	13	39	2	3	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0003	4114	49	15	4	27	2	1	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0004	4115	34	0	1	30	1	2	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0005	4116	27	0	0	27	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0006	4116	26	3	12	0	5	6	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0007	4113	17	0	0	17	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0008	4114	12	12	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0009	4114	10	8	2	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0010	4115	8	8	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0011	4114	8	0	0	3	0	5	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/1	t0012	4115	7	0	4	0	2	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0013	4114	7	4	1	0	1	1	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0014	4114	6	5	1	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0015	4114	6	5	1	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0016	4116	6	0	6	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0017	4114	5	0	1	4	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0018	4115	4	2	0	1	1	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0019	4114	4	0	0	0	0	4	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0020	4114	4	0	1	2	0	1	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0021	4115	3	0	0	3	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0022	4116	3	0	0	3	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0023	4115	3	3	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0024	4115	3	0	0	3	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0025	4115	3	3	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0026	4115	2	0	0	1	0	1	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0027	4113	2	2	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0028	4113	2	2	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0029	4114	2	0	0	2	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0030	4115	2	0	0	0	0	2	copy fasta	BTG1	chr12	92135278	92150846