JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM4_chr7_99885403_99924530	1/1	t0002	1890	112	4	24	61	5	16	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0003	1890	5	4	1	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0004	1890	5	0	4	0	1	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0005	1890	4	0	0	4	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0006	1890	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0007	1890	3	3	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0008	1890	1	0	0	1	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0009	1890	1	1	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0010	1890	1	0	0	0	0	1	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0011	1890	1	1	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0012	1890	1	1	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0013	1878	1	1	0	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0014	1890	1	0	0	1	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM4_chr7_99885403_99924530	0/0	t0015	1890	1	0	1	0	0	0	copy fasta	TRIM4	chr7	99885403	99924530
TRIM50_chr7_73307536_73333082	1/1	t0001	587	338	82	68	138	14	34	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0002	587	2	0	0	2	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0003	587	1	0	1	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0004	587	1	0	1	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0005	587	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0006	587	1	0	0	1	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0007	587	1	0	1	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM50_chr7_73307536_73333082	0/0	t0008	587	1	0	1	0	0	0	copy fasta	TRIM50	chr7	73307536	73333082
TRIM51G_chr11_48970498_48988885	0/1	t0001	152	266	64	55	116	10	20	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	1/0	t0002	152	150	29	16	80	5	19	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	t0003	152	7	5	1	0	1	0	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51G_chr11_48970498_48988885	0/0	t0004	152	1	0	0	0	0	1	copy fasta	TRIM51G	chr11	48970498	48988885
TRIM51_chr11_55878297_55896810	1/1	t0001	271	396	85	66	192	12	39	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	t0002	271	34	8	4	16	2	4	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	t0003	271	5	5	0	0	0	0	copy fasta	TRIM51	chr11	55878297	55896810
TRIM51_chr11_55878297_55896810	0/0	t0004	271	1	0	0	0	0	1	copy fasta	TRIM51	chr11	55878297	55896810
TRIM52_chr5_181250147_181266143	1/1	t0001	1993	222	12	47	118	14	29	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0002	1992	86	23	5	53	0	5	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0003	1993	26	25	1	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0004	1993	23	11	3	6	0	3	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0005	1992	14	13	1	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0006	1992	8	5	2	0	0	1	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0007	1993	6	0	5	1	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0008	1993	4	4	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0009	1993	3	0	0	3	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0010	1993	2	0	0	0	0	2	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0011	1993	2	2	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0012	1993	2	0	0	2	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0013	1993	2	2	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0014	1993	1	0	0	1	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0015	1993	1	0	1	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0016	1992	1	0	0	1	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0017	1992	1	1	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0018	1992	1	0	0	1	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0019	1992	1	1	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0020	1992	1	1	0	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143