JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM52_chr5_181250147_181266143	0/0	t0021	1993	1	0	1	0	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0022	1993	1	0	0	1	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM52_chr5_181250147_181266143	0/0	t0023	1993	1	0	0	1	0	0	copy fasta	TRIM52	chr5	181250147	181266143
TRIM54_chr2_27277429_27312435	1/1	t0001	853	267	80	58	85	14	28	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	t0002	853	3	3	0	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	t0003	853	2	1	1	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	t0004	853	1	0	1	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	t0005	853	1	1	0	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	t0006	853	1	1	0	0	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM54_chr2_27277429_27312435	0/0	t0007	853	1	0	0	1	0	0	copy fasta	TRIM54	chr2	27277429	27312435
TRIM55_chr8_66122129_66180485	1/1	t0001	1033	216	64	43	76	11	20	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	t0002	1033	24	18	2	0	0	4	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	t0003	1033	4	4	0	0	0	0	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	t0004	1033	3	0	1	0	1	1	copy fasta	TRIM55	chr8	66122129	66180485
TRIM55_chr8_66122129_66180485	0/0	t0005	1033	1	0	0	0	0	1	copy fasta	TRIM55	chr8	66122129	66180485
TRIM56_chr7_101080481_101102967	0/0	t0001	8642	35	1	1	23	0	10	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0002	8643	33	6	12	9	3	3	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0003	8641	33	1	1	25	0	6	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0004	8640	33	0	10	22	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0005	8678	21	7	0	12	0	2	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0006	8643	9	0	4	0	1	4	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0007	8643	8	0	0	8	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0008	8642	8	0	4	1	2	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0009	8587	8	1	0	7	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0010	8679	7	5	0	2	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0011	8591	6	1	5	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0012	8590	6	6	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0013	8634	5	5	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0014	8551	4	4	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0015	8641	4	0	0	4	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0016	8642	4	0	0	4	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0017	8641	4	0	1	3	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	1/0	t0018	8642	4	0	3	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0019	8637	4	0	1	1	0	2	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0020	8643	3	2	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0021	8643	3	0	3	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0022	8641	3	0	0	3	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0023	8643	3	0	0	3	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0024	8639	3	3	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0025	8639	3	0	0	3	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0026	8677	3	0	0	2	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0027	8641	3	0	0	3	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0028	8641	3	0	0	0	0	3	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0029	8644	3	0	1	1	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0030	8590	3	3	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0031	8591	2	2	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0032	8590	2	2	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0033	8591	2	2	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0034	8642	2	0	0	2	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0035	8643	2	0	0	2	0	0	copy fasta	TRIM56	chr7	101080481	101102967