JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM56_chr7_101080481_101102967	0/0	t0086	8642	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0087	8642	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0088	8643	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0089	8642	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0090	8643	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0091	8678	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0092	8640	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0093	8638	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0094	8638	1	0	0	0	1	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0095	8638	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0096	8592	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0097	8679	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0098	8679	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0099	8678	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0100	8678	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0101	8677	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0102	8639	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0103	8645	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0104	8681	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0105	8642	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0106	8641	1	0	0	0	1	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0107	8643	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0108	8641	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0109	8642	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0110	8641	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0111	8641	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0112	8641	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0113	8640	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0114	8641	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0115	8590	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0116	8638	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0117	8677	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0118	8639	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0119	8586	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0120	8586	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0121	8612	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0122	8612	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0123	8612	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0124	8645	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0125	8646	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0126	8645	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0127	8645	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0128	8641	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0129	8601	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0130	8639	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0131	8641	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0132	8645	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0133	8640	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0134	8641	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0135	8640	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967