JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM56_chr7_101080481_101102967	0/0	t0136	8642	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0137	8645	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0138	8643	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0139	8652	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0140	8641	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0141	8640	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0142	8640	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0143	8641	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0144	8641	1	0	1	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0145	8588	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0146	8586	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0147	8639	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0148	8637	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0149	8640	1	0	0	0	1	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0150	8586	1	0	0	0	0	1	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0151	8545	1	0	0	1	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0152	8634	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0153	8633	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0154	8634	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0155	8634	1	1	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/0	t0156	8598	1	0	0	0	1	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM56_chr7_101080481_101102967	0/1	t0157	8642	1	0	0	0	0	0	copy fasta	TRIM56	chr7	101080481	101102967
TRIM58_chr1_247852187_247885138	0/1	t0001	3706	109	17	19	54	2	16	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0002	3715	72	1	16	34	7	14	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0003	3706	34	4	3	19	2	6	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0004	3709	20	0	2	16	1	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0005	3706	18	0	9	9	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0006	3713	17	0	9	1	0	7	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0007	3713	14	0	0	14	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0008	3694	11	10	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0009	3710	9	0	1	7	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0010	3698	8	0	0	8	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0011	3711	7	1	2	3	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	1/0	t0012	3710	7	5	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0013	3710	7	5	2	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0014	3715	6	0	0	6	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0015	3694	6	4	2	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0016	3694	5	5	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0017	3714	5	1	2	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0018	3706	5	0	3	0	1	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0019	3704	5	4	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0020	3709	5	5	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0021	3710	5	1	2	0	2	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0022	3702	4	1	0	3	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0023	3694	3	3	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0024	3719	3	0	1	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0025	3707	3	0	0	3	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0026	3702	3	2	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0027	3710	3	2	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0028	3715	2	1	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138