JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM58_chr1_247852187_247885138	0/0	t0029	3719	2	0	0	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0030	3694	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0031	3702	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0032	3705	2	0	0	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0033	3694	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0034	3711	2	1	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0035	3713	2	2	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0036	3709	2	0	0	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0037	3705	2	0	0	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0038	3705	2	0	0	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0039	3706	2	0	0	2	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0040	3694	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0041	3715	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0042	3714	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0043	3710	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0044	3713	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0045	3695	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0046	3695	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0047	3715	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0048	3711	1	0	0	0	1	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0049	3703	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0050	3694	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0051	3702	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0052	3694	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0053	3706	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0054	3706	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0055	3706	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0056	3708	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0057	3716	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0058	3716	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0059	3713	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0060	3709	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0061	3705	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0062	3709	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0063	3705	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0064	3701	1	0	0	0	1	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0065	3705	1	0	0	0	1	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0066	3704	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0067	3710	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0068	3706	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0069	3718	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0070	3706	1	1	0	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0071	3702	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0072	3698	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0073	3706	1	0	0	1	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0074	3710	1	0	1	0	0	0	copy fasta	TRIM58	chr1	247852187	247885138
TRIM58_chr1_247852187_247885138	0/0	t0075	3706	1	0	0	0	0	1	copy fasta	TRIM58	chr1	247852187	247885138
TRIM59_chr3_160430503_160454786	1/1	t0001	2613	142	21	25	72	7	15	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0002	2612	54	11	15	24	1	3	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0003	2611	20	1	4	6	2	7	copy fasta	TRIM59	chr3	160430503	160454786