JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM59_chr3_160430503_160454786	0/0	t0004	2614	19	9	3	5	0	2	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0005	2613	16	1	4	9	0	2	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0006	2605	13	8	1	4	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0007	2610	9	9	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0008	2612	8	0	3	0	0	5	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0009	2609	8	1	0	2	1	4	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0010	2606	6	5	1	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0011	2608	5	3	2	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0012	2611	4	1	3	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0013	2612	3	3	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0014	2614	3	2	1	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0015	2605	3	3	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0016	2611	3	0	3	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0017	2614	2	0	0	1	0	1	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0018	2615	2	1	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0019	2611	2	0	0	2	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0020	2613	2	0	1	0	1	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0021	2610	2	2	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0022	2610	2	1	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0023	2613	2	2	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0024	2612	2	0	1	0	0	1	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0025	2611	2	0	0	0	2	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0026	2613	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0027	2611	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0028	2605	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0029	2607	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0030	2605	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0031	2612	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0032	2613	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0033	2612	1	0	0	0	0	1	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0034	2614	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0035	2597	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0036	2611	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0037	2612	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0038	2613	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0039	2614	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0040	2613	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0041	2612	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0042	2613	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0043	2613	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0044	2613	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0045	2614	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0046	2598	1	0	0	0	0	1	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0047	2612	1	0	0	1	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0048	2612	1	0	1	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0049	2612	1	1	0	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0050	2612	1	0	1	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM59_chr3_160430503_160454786	0/0	t0051	2612	1	0	1	0	0	0	copy fasta	TRIM59	chr3	160430503	160454786
TRIM5_chr11_5658195_5690074	0/1	t0001	1884	102	5	14	60	6	16	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0002	1884	84	27	12	36	4	5	copy fasta	TRIM5	chr11	5658195	5690074