JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM5_chr11_5658195_5690074	0/0	t0003	1884	51	7	3	40	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0004	1884	40	2	16	10	4	8	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0005	1884	21	0	6	15	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0006	1884	19	0	6	12	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	1/0	t0007	1883	14	9	2	0	0	2	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0008	1884	10	0	0	10	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0009	1892	7	1	3	0	1	2	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0010	1892	6	6	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0011	1884	6	0	0	6	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0012	1892	5	5	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0013	1884	5	0	0	3	0	2	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0014	1884	4	4	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0015	1884	4	0	3	0	1	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0016	1885	4	3	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0017	1883	4	3	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0018	1884	4	0	4	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0019	1883	4	1	1	2	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0020	1884	3	2	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0021	1884	3	3	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0022	1885	3	1	0	1	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0023	1883	3	0	0	3	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0024	1884	3	2	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0025	1884	3	0	0	0	0	3	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0026	1884	2	2	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0027	1883	2	0	0	2	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0028	1883	2	2	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0029	1885	2	2	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0030	1883	2	0	0	0	0	2	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0031	1892	2	2	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0032	1884	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0033	1883	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0034	1884	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0035	1883	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0036	1884	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0037	1884	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0038	1884	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0039	1885	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0040	1893	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0041	1884	1	1	0	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0042	1883	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0043	1884	1	0	0	0	0	1	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0044	1884	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0045	1884	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0046	1884	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0047	1884	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0048	1885	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0049	1884	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0050	1884	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0051	1884	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM5_chr11_5658195_5690074	0/0	t0052	1885	1	0	0	1	0	0	copy fasta	TRIM5	chr11	5658195	5690074