JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM5_chr11_5658195_5690074	0/0	t0053	1884	1	0	1	0	0	0	copy fasta	TRIM5	chr11	5658195	5690074
TRIM60_chr4_165026999_165046749	1/0	t0001	432	172	52	41	45	8	25	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/1	t0002	432	167	17	35	88	6	20	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0003	432	13	11	0	2	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0004	432	12	5	0	6	0	1	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0005	432	8	0	0	8	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0006	432	8	8	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0007	432	5	5	0	0	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0008	432	1	0	0	1	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0009	432	1	0	0	1	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM60_chr4_165026999_165046749	0/0	t0010	432	1	0	0	1	0	0	copy fasta	TRIM60	chr4	165026999	165046749
TRIM61_chr4_164963281_164982657	1/1	t0001	909	166	43	31	63	9	18	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0002	905	129	7	15	91	3	13	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0003	906	67	12	23	16	3	13	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0004	909	9	9	0	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0005	909	8	8	0	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0006	909	7	6	1	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0007	906	7	0	6	0	1	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0008	909	4	4	0	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0009	909	4	2	0	2	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0010	909	2	2	0	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0011	909	1	1	0	0	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0012	905	1	0	0	1	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0013	909	1	0	0	1	0	0	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0014	905	1	0	0	0	0	1	copy fasta	TRIM61	chr4	164963281	164982657
TRIM61_chr4_164963281_164982657	0/0	t0015	909	1	0	0	0	0	1	copy fasta	TRIM61	chr4	164963281	164982657
TRIM62_chr1_33140399_33187043	0/1	t0001	2390	191	48	38	77	6	21	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0002	2390	63	2	11	36	4	10	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	1/0	t0003	2390	57	20	2	31	0	3	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0004	2390	7	7	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0005	2390	4	0	0	4	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0006	2390	2	0	0	2	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0007	2390	2	2	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0008	2390	2	2	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0009	2390	2	2	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0010	2390	2	2	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0011	2390	1	0	0	1	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0012	2390	1	0	0	1	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0013	2390	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0014	2390	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0015	2390	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0016	2390	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0017	2390	1	1	0	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM62_chr1_33140399_33187043	0/0	t0018	2390	1	0	1	0	0	0	copy fasta	TRIM62	chr1	33140399	33187043
TRIM63_chr1_26046301_26072630	0/1	t0001	709	169	13	41	95	6	13	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	1/0	t0002	709	140	64	19	40	4	12	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	t0003	709	23	18	5	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	t0004	709	1	1	0	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	t0005	709	1	0	1	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	t0006	709	1	1	0	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630