Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTG1_chr12_92135278_92150846	0/0	t0031	4115	2	0	0	0	0	2	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0032	4114	2	2	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0033	4114	1	0	0	1	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0034	4115	1	0	0	0	0	1	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0035	4113	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0036	4114	1	0	0	1	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0037	4115	1	0	0	1	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0038	4098	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0039	4114	1	0	0	1	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0040	4114	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0041	4114	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0042	4114	1	0	0	1	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0043	4114	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0044	4114	1	0	0	1	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0045	4114	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0046	4115	1	0	1	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0047	4114	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0048	4115	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0049	4115	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0050	4115	1	0	1	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG1_chr12_92135278_92150846	0/0	t0051	4113	1	1	0	0	0	0	copy fasta	BTG1	chr12	92135278	92150846
BTG2_chr1_203300519_203314602	0/1	t0001	2252	274	18	51	156	11	37	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0002	2252	85	48	11	17	6	3	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0003	2252	36	9	5	16	1	5	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	1/0	t0004	2253	10	9	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0005	2252	6	5	1	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0006	2252	4	4	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0007	2253	4	0	0	4	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0008	2252	2	0	0	2	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0009	2252	2	0	0	2	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0010	2252	2	0	2	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0011	2252	2	2	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0012	2253	2	0	0	2	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0013	2252	1	0	0	0	0	1	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0014	2252	1	1	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0015	2235	1	0	0	1	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0016	2252	1	0	0	1	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0017	2252	1	0	0	1	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0018	2252	1	1	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG2_chr1_203300519_203314602	0/0	t0019	2252	1	1	0	0	0	0	copy fasta	BTG2	chr1	203300519	203314602
BTG3_chr21_17588653_17617901	1/1	t0001	652	348	88	60	145	16	37	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0002	652	35	0	2	33	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0003	648	11	8	3	0	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0004	652	3	2	1	0	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0005	652	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0006	652	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0007	652	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0008	652	1	0	0	1	0	0	copy fasta	BTG3	chr21	17588653	17617901
BTG3_chr21_17588653_17617901	0/0	t0009	652	1	0	0	0	0	1	copy fasta	BTG3	chr21	17588653	17617901
BTG4_chr11_111489815_111517386	1/1	t0001	553	322	68	65	146	10	31	copy fasta	BTG4	chr11	111489815	111517386