JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM63_chr1_26046301_26072630	0/0	t0007	709	1	0	0	1	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	t0008	709	1	1	0	0	0	0	copy fasta	TRIM63	chr1	26046301	26072630
TRIM63_chr1_26046301_26072630	0/0	t0009	709	1	0	0	0	0	1	copy fasta	TRIM63	chr1	26046301	26072630
TRIM64B_chr11_89865438_89883487	1/0	t0001	304	204	22	29	131	3	18	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	t0002	304	2	0	1	0	1	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	t0003	304	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	t0004	304	1	0	0	1	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64B_chr11_89865438_89883487	0/0	t0005	304	1	1	0	0	0	0	copy fasta	TRIM64B	chr11	89865438	89883487
TRIM64_chr11_89961037_89979072	1/0	t0001	304	25	0	6	18	0	0	copy fasta	TRIM64	chr11	89961037	89979072
TRIM65_chr17_75883963_75901951	1/1	t0001	1831	159	19	37	75	5	21	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0002	1831	65	17	10	27	3	8	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0003	1831	41	1	6	26	4	4	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0004	1831	26	24	2	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0005	1831	12	6	2	3	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0006	1830	12	11	1	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0007	1831	6	3	3	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0008	1831	4	0	0	4	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0009	1832	4	2	1	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0010	1831	3	3	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0011	1831	3	0	0	2	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0012	1831	2	2	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0013	1832	2	2	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0014	1832	2	1	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0015	1831	2	2	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0016	1831	2	2	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0017	1831	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0018	1831	1	1	0	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0019	1832	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0020	1831	1	0	1	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0021	1831	1	0	0	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0022	1831	1	0	0	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0023	1831	1	0	0	0	0	1	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0024	1832	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0025	1831	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0026	1831	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0027	1831	1	0	1	0	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0028	1831	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM65_chr17_75883963_75901951	0/0	t0029	1831	1	0	0	1	0	0	copy fasta	TRIM65	chr17	75883963	75901951
TRIM66_chr11_8607040_8687665	0/1	t0001	6517	117	32	21	48	4	11	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0002	6517	85	10	16	43	7	9	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0003	6517	51	6	5	38	1	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0004	6517	40	0	15	18	3	4	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	1/0	t0005	6517	10	7	2	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0006	6517	7	1	3	0	0	3	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0007	6517	7	1	2	0	2	2	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0008	6517	6	0	0	6	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0009	6517	6	6	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0010	6517	5	0	0	5	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0011	6517	4	3	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0012	6514	4	4	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665