JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM66_chr11_8607040_8687665	0/0	t0013	6521	3	0	0	3	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0014	6517	3	0	0	3	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0015	6517	3	1	0	0	0	2	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0016	6517	3	0	0	3	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0017	6517	2	2	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0018	6517	2	2	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0019	6517	2	2	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0020	6517	2	1	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0021	6517	2	2	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0022	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0023	6521	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0024	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0025	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0026	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0027	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0028	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0029	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0030	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0031	6517	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0032	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0033	6517	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0034	6517	1	0	0	0	1	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0035	6517	1	0	1	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0036	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0037	6517	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0038	6517	1	0	0	1	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0039	6517	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0040	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0041	6517	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0042	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0043	6517	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0044	6517	1	0	0	0	0	1	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0045	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0046	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM66_chr11_8607040_8687665	0/0	t0047	6517	1	1	0	0	0	0	copy fasta	TRIM66	chr11	8607040	8687665
TRIM67_chr1_231157058_231226565	0/1	t0001	7038	103	18	29	36	5	14	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0002	7038	36	1	7	25	2	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0003	7038	26	0	0	19	0	7	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0004	7038	25	3	8	8	1	5	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0005	7039	23	16	1	6	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0006	7038	22	0	5	16	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0007	7038	12	0	3	8	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0008	7038	7	5	1	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0009	7039	7	7	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0010	7039	6	6	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0011	7038	5	0	0	5	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0012	7038	5	0	0	5	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0013	7038	4	4	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0014	7038	4	0	0	4	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0015	7038	3	3	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565