JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM67_chr1_231157058_231226565	0/0	t0016	7038	3	3	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0017	7038	3	2	1	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0018	7038	3	0	3	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0019	7038	3	0	3	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0020	7038	3	3	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0021	7039	3	0	0	2	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0022	7039	2	0	0	0	0	2	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0023	7038	2	0	2	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0024	7035	2	0	0	0	1	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0025	7038	2	0	0	2	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0026	7038	2	2	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0027	7038	2	2	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	1/0	t0028	7038	1	0	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0029	7038	1	0	1	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0030	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0031	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0032	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0033	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0034	7039	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0035	7039	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0036	7039	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0037	7039	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0038	7039	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0039	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0040	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0041	7038	1	0	1	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0042	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0043	7038	1	0	0	0	1	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0044	7038	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0045	7035	1	0	0	0	1	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0046	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0047	7038	1	0	0	0	1	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0048	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0049	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0050	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0051	7038	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0052	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0053	7035	1	0	0	0	0	1	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0054	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0055	7038	1	0	1	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0056	7039	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0057	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0058	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0059	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0060	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0061	7038	1	0	0	1	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0062	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM67_chr1_231157058_231226565	0/0	t0063	7038	1	1	0	0	0	0	copy fasta	TRIM67	chr1	231157058	231226565
TRIM68_chr11_4593672_4613231	0/1	t0001	1867	170	18	38	80	6	27	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0002	1867	88	2	12	58	4	12	copy fasta	TRIM68	chr11	4593672	4613231