JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM68_chr11_4593672_4613231	0/0	t0003	1867	16	15	1	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0004	1867	14	13	1	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0005	1867	11	9	2	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0006	1867	9	9	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0007	1867	7	0	5	0	1	1	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0008	1867	6	1	0	5	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0009	1867	4	0	3	0	1	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0010	1867	4	0	0	4	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0011	1867	4	4	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	1/0	t0012	1867	4	2	1	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0013	1867	3	3	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0014	1867	2	1	0	0	0	1	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0015	1867	2	2	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0016	1867	2	2	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0017	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0018	1867	1	0	0	0	0	1	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0019	1867	1	0	1	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0020	1867	1	0	0	1	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0021	1867	1	0	1	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0022	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0023	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0024	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0025	1867	1	0	1	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0026	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0027	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0028	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0029	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0030	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0031	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM68_chr11_4593672_4613231	0/0	t0032	1867	1	1	0	0	0	0	copy fasta	TRIM68	chr11	4593672	4613231
TRIM69_chr15_44731528_44772827	0/1	t0001	233	285	63	58	117	14	32	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	t0002	233	63	16	4	29	4	10	copy fasta	TRIM69	chr15	44731528	44772827
TRIM69_chr15_44731528_44772827	0/0	t0003	233	1	1	0	0	0	0	copy fasta	TRIM69	chr15	44731528	44772827
TRIM6_chr11_5591637_5617952	0/0	t0001	1872	120	14	36	55	5	10	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	1/0	t0002	1872	97	18	22	39	3	14	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/1	t0003	1873	78	4	7	60	2	4	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0004	1872	52	22	6	18	0	6	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0005	1873	38	4	5	19	5	5	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0006	1872	27	0	3	20	1	3	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0007	1871	9	7	1	0	1	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0008	1872	8	0	2	5	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0009	1873	5	0	0	3	0	2	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0010	1872	3	3	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0011	1873	3	0	0	3	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0012	1871	3	3	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0013	1873	3	2	1	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0014	1872	2	0	1	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0015	1871	2	0	0	0	0	2	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0016	1872	2	2	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0017	1871	2	0	1	0	1	0	copy fasta	TRIM6	chr11	5591637	5617952