JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM6_chr11_5591637_5617952	0/0	t0018	1872	2	2	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0019	1871	2	1	1	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0020	1872	2	2	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0021	1872	1	0	1	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0022	1873	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0023	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0024	1873	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0025	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0026	1873	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0027	1872	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0028	1872	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0029	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0030	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0031	1873	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0032	1872	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0033	1871	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0034	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0035	1873	1	0	1	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0036	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0037	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0038	1872	1	0	0	0	0	1	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0039	1872	1	1	0	0	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM6_chr11_5591637_5617952	0/0	t0040	1872	1	0	0	1	0	0	copy fasta	TRIM6	chr11	5591637	5617952
TRIM71_chr3_32812997_32902824	0/0	t0001	6100	75	11	16	25	7	16	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0002	6098	74	26	9	35	0	4	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/1	t0003	6093	23	4	8	3	3	4	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0004	6096	17	0	0	16	1	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0005	6098	16	15	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0006	6100	13	0	0	13	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0007	6098	11	10	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0008	6096	11	0	0	11	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0009	6098	8	1	3	0	2	2	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0010	6102	4	2	2	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	1/0	t0011	6098	4	3	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0012	6093	4	2	1	0	1	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0013	6098	4	0	0	4	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0014	6102	3	0	3	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0015	6100	3	3	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0016	6098	3	3	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0017	6100	3	0	0	2	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0018	6102	2	2	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0019	6101	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0020	6096	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0021	6100	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0022	6100	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0023	6098	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0024	6098	2	0	2	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0025	6096	2	0	0	2	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0026	6093	2	2	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0027	6100	2	0	0	1	0	1	copy fasta	TRIM71	chr3	32812997	32902824