JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM71_chr3_32812997_32902824	0/0	t0028	6102	1	0	0	0	1	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0029	6093	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0030	6100	1	0	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0031	6100	1	0	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0032	6100	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0033	6101	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0034	6100	1	0	0	0	1	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0035	6100	1	0	0	0	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0036	6100	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0037	6100	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0038	6100	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0039	6101	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0040	6100	1	0	0	0	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0041	6096	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0042	6100	1	0	0	0	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0043	6100	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0044	6100	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0045	6098	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0046	6098	1	0	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0047	6098	1	0	0	0	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0048	6093	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0049	6093	1	0	0	0	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0050	6093	1	0	0	0	0	1	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0051	6098	1	1	0	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0052	6094	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0053	6101	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0054	6100	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0055	6096	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0056	6096	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0057	6097	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0058	6094	1	0	0	1	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM71_chr3_32812997_32902824	0/0	t0059	6100	1	0	1	0	0	0	copy fasta	TRIM71	chr3	32812997	32902824
TRIM72_chr16_31209119_31236537	0/0	t0001	6969	111	21	33	42	6	9	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/1	t0002	6968	77	5	15	36	5	15	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	1/0	t0003	6969	21	20	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0004	6970	15	5	1	4	0	5	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0005	6964	6	6	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0006	6970	6	0	2	2	0	2	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0007	6969	4	0	0	3	0	1	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0008	6967	3	0	1	1	1	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0009	6968	3	1	0	2	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0010	6970	3	1	2	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0011	6967	3	3	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0012	6968	2	0	0	2	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0013	6969	2	0	0	2	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0014	6969	2	2	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0015	6970	2	2	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0016	6957	2	2	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0017	6957	1	0	0	0	0	1	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0018	6956	1	0	0	0	0	1	copy fasta	TRIM72	chr16	31209119	31236537