JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM72_chr16_31209119_31236537	0/0	t0019	6957	1	0	0	0	0	1	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0020	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0021	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0022	6965	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0023	6964	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0024	6971	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0025	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0026	6963	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0027	6968	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0028	6968	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0029	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0030	6970	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0031	6970	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0032	6970	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0033	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0034	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0035	6969	1	0	0	0	0	1	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0036	6969	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0037	6968	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0038	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0039	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0040	6968	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0041	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0042	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0043	6968	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0044	6969	1	0	0	0	1	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0045	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0046	6969	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0047	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0048	6969	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0049	6969	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0050	6968	1	0	0	0	1	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0051	6969	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0052	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0053	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0054	6969	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0055	6969	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0056	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0057	6969	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0058	6970	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0059	6970	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0060	6971	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0061	6970	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0062	6970	1	0	0	1	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0063	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0064	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0065	6969	1	1	0	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM72_chr16_31209119_31236537	0/0	t0066	6963	1	0	1	0	0	0	copy fasta	TRIM72	chr16	31209119	31236537
TRIM73_chr7_75390629_75410605	0/0	t0001	598	148	71	33	21	6	17	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0002	598	144	5	37	66	8	28	copy fasta	TRIM73	chr7	75390629	75410605