JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM73_chr7_75390629_75410605	0/0	t0003	598	10	0	4	1	2	3	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0004	598	9	9	0	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0005	598	3	2	0	1	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0006	598	3	3	0	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0007	598	1	0	0	1	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0008	598	1	0	0	1	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0009	598	1	0	1	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0010	598	1	0	1	0	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM73_chr7_75390629_75410605	0/0	t0011	598	1	0	0	1	0	0	copy fasta	TRIM73	chr7	75390629	75410605
TRIM74_chr7_72954485_72974466	0/0	t0001	598	220	71	46	66	8	29	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0002	598	73	2	12	48	4	7	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0003	598	5	1	1	2	0	1	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0004	574	2	0	2	0	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0005	598	1	0	1	0	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0006	598	1	1	0	0	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0007	598	1	0	0	0	0	1	copy fasta	TRIM74	chr7	72954485	72974466
TRIM74_chr7_72954485_72974466	0/0	t0008	598	1	1	0	0	0	0	copy fasta	TRIM74	chr7	72954485	72974466
TRIM75_chr4_165048866_165065554	1/1	t0001	432	400	84	77	179	16	42	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0002	432	6	6	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0003	432	5	0	0	4	0	1	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0004	434	5	5	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0005	432	4	4	0	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0006	432	2	1	1	0	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0007	432	1	0	0	0	0	1	copy fasta	TRIM75	chr4	165048866	165065554
TRIM75_chr4_165048866_165065554	0/0	t0008	432	1	0	0	1	0	0	copy fasta	TRIM75	chr4	165048866	165065554
TRIM7_chr5_181188924_181210196	1/1	t0001	1329	320	31	62	171	10	44	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0002	1328	56	44	8	2	0	2	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0003	1329	10	10	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0004	1329	3	3	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0005	1328	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0006	1328	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0007	1328	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0008	1329	1	1	0	0	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM7_chr5_181188924_181210196	0/0	t0009	1329	1	0	0	1	0	0	copy fasta	TRIM7	chr5	181188924	181210196
TRIM8_chr10_102639479_102663318	1/1	t0001	1104	290	55	61	120	12	40	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0002	1104	59	14	9	35	0	1	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0003	1105	12	11	1	0	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0004	1104	4	3	0	0	0	1	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0005	1104	2	2	0	0	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0006	1104	1	0	0	0	0	1	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0007	1104	1	0	0	1	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0008	1104	1	0	1	0	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0009	1104	1	0	0	0	0	1	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0010	1104	1	0	0	1	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0011	1104	1	0	0	1	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM8_chr10_102639479_102663318	0/0	t0012	1104	1	1	0	0	0	0	copy fasta	TRIM8	chr10	102639479	102663318
TRIM9_chr14_50970266_51100105	1/1	t0001	2192	117	38	23	36	5	13	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0002	2192	80	2	21	40	4	13	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0003	2192	76	9	15	43	4	5	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0004	2192	19	10	5	3	1	0	copy fasta	TRIM9	chr14	50970266	51100105