JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIM9_chr14_50970266_51100105	0/0	t0005	2192	13	12	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0006	2192	12	0	0	9	0	3	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0007	2192	3	2	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0008	2192	3	3	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0009	2192	3	3	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0010	2192	3	3	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0011	2192	2	2	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0012	2192	2	0	0	2	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0013	2192	2	2	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0014	2192	2	0	2	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0015	2192	1	0	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0016	2192	1	0	0	1	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0017	2192	1	1	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0018	2192	1	0	1	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIM9_chr14_50970266_51100105	0/0	t0019	2192	1	1	0	0	0	0	copy fasta	TRIM9	chr14	50970266	51100105
TRIML1_chr4_188134441_188152743	1/0	t0001	490	127	41	13	60	3	9	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/1	t0002	490	73	24	25	8	5	10	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	t0003	490	19	0	1	16	0	2	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	t0004	487	5	4	1	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	t0005	487	2	2	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	t0006	490	1	1	0	0	0	0	copy fasta	TRIML1	chr4	188134441	188152743
TRIML1_chr4_188134441_188152743	0/0	t0007	490	1	0	0	0	0	1	copy fasta	TRIML1	chr4	188134441	188152743
TRIML2_chr4_188086272_188114603	0/0	t0001	685	80	1	13	59	1	6	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0002	687	66	12	22	9	9	14	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0003	687	51	5	12	31	1	2	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0004	686	39	4	1	22	1	11	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/1	t0005	687	26	17	6	1	1	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0006	686	19	17	2	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0007	687	14	4	3	7	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	1/0	t0008	685	13	3	2	2	2	3	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0009	688	10	3	2	2	1	2	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0010	686	9	2	0	5	0	2	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0011	687	8	0	4	1	2	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0012	685	7	0	0	7	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0013	685	6	0	0	5	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0014	687	6	1	0	5	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0015	686	5	5	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0016	687	4	0	0	4	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0017	685	4	1	0	3	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0018	684	4	0	2	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0019	687	4	2	0	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0020	685	4	0	0	3	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0021	688	3	0	1	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0022	686	3	0	1	2	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0023	686	3	1	2	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0024	685	3	0	0	3	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0025	686	3	0	0	3	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0026	686	3	2	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0027	685	3	3	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0028	688	2	0	1	0	0	1	copy fasta	TRIML2	chr4	188086272	188114603