JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIML2_chr4_188086272_188114603	0/0	t0029	687	2	2	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0030	685	2	2	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0031	688	2	0	1	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0032	686	2	2	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0033	686	1	0	0	0	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0034	686	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0035	685	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0036	685	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0037	688	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0038	688	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0039	687	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0040	685	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0041	684	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0042	684	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0043	687	1	0	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0044	686	1	0	0	0	0	1	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0045	686	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0046	674	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0047	686	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0048	685	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0049	688	1	0	0	1	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0050	687	1	0	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0051	687	1	0	1	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIML2_chr4_188086272_188114603	0/0	t0052	686	1	1	0	0	0	0	copy fasta	TRIML2	chr4	188086272	188114603
TRIOBP_chr22_37692048_37781556	0/0	t0001	2995	77	8	24	30	6	9	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0002	2990	54	2	17	31	2	2	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/1	t0003	2990	26	0	4	14	2	5	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0004	2997	17	2	3	9	0	3	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0005	2977	11	6	2	0	0	3	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0006	2982	10	10	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0007	2996	9	8	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0008	2995	8	0	3	3	2	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0009	2995	7	0	0	7	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0010	2993	7	1	2	3	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0011	2980	7	6	0	0	1	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0012	2993	5	0	1	1	2	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0013	2997	4	3	0	0	1	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0014	2996	4	0	0	3	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0015	2979	4	4	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0016	2976	3	3	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	1/0	t0017	2988	3	0	0	0	1	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0018	2994	3	0	0	2	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0019	2993	3	3	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0020	2991	3	2	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0021	2976	3	3	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0022	2994	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0023	2984	2	1	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0024	2984	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0025	2995	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0026	2996	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556