Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTG4_chr11_111489815_111517386	0/0	t0002	553	10	9	1	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	t0003	553	9	6	2	0	0	1	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	t0004	553	8	8	0	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTG4_chr11_111489815_111517386	0/0	t0005	553	5	5	0	0	0	0	copy fasta	BTG4	chr11	111489815	111517386
BTK_chrX_101344450_101391191	0/0	t0001	596	147	43	20	64	1	19	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	1/0	t0002	596	82	18	13	44	1	5	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/1	t0003	596	60	5	21	21	5	7	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	t0004	596	9	8	0	0	1	0	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	t0005	594	3	0	1	0	1	1	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	t0006	596	1	1	0	0	0	0	copy fasta	BTK	chrX	101344450	101391191
BTK_chrX_101344450_101391191	0/0	t0007	596	1	1	0	0	0	0	copy fasta	BTK	chrX	101344450	101391191
BTLA_chr3_112458966_112504472	0/0	t0001	2259	76	3	12	53	1	7	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0002	2257	76	2	20	36	5	13	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0003	2257	57	8	7	36	0	6	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0004	2255	24	10	11	3	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0005	2255	10	0	4	6	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0006	2255	9	6	1	0	0	2	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	1/0	t0007	2257	9	7	0	1	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0008	2253	9	9	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0009	2259	8	8	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0010	2259	7	2	0	2	0	3	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0011	2257	7	6	0	1	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0012	2261	6	0	0	3	0	3	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/1	t0013	2257	6	2	3	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0014	2261	6	6	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0015	2257	5	4	1	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0016	2257	4	4	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0017	2253	4	0	0	4	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0018	2260	3	3	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0019	2257	2	2	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0020	2253	2	1	0	1	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0021	2255	2	2	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0022	2261	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0023	2255	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0024	2253	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0025	2257	1	0	0	1	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0026	2257	1	0	0	1	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0027	2257	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0028	2255	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0029	2259	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0030	2258	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0031	2255	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0032	2257	1	1	0	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	t0033	2255	1	0	1	0	0	0	copy fasta	BTLA	chr3	112458966	112504472
BTN1A1_chr6_26495303_26515425	1/1	t0001	1365	154	33	40	52	8	19	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0002	1364	146	6	29	83	4	24	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0003	1364	74	48	6	17	1	2	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0004	1364	10	0	3	0	2	5	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0005	1365	7	0	0	7	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0006	1365	6	0	0	6	0	0	copy fasta	BTN1A1	chr6	26495303	26515425