JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIOBP_chr22_37692048_37781556	0/0	t0027	2980	2	2	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0028	2991	2	0	0	1	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0029	2988	2	0	2	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0030	2990	2	0	1	0	1	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0031	2995	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0032	2995	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0033	2982	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0034	2997	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0035	2996	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0036	2994	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0037	2989	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0038	2995	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0039	2995	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0040	2995	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0041	2995	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0042	2994	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0043	2993	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0044	2992	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0045	2982	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0046	2981	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0047	2993	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0048	2992	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0049	2990	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0050	2985	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0051	2978	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0052	2978	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0053	2993	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0054	2988	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0055	2975	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0056	2974	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0057	2974	1	1	0	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0058	2976	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0059	2997	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0060	2994	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0061	2992	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0062	2993	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0063	2992	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0064	2990	1	0	0	1	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0065	2990	1	0	0	0	0	1	copy fasta	TRIOBP	chr22	37692048	37781556
TRIOBP_chr22_37692048_37781556	0/0	t0066	2982	1	0	1	0	0	0	copy fasta	TRIOBP	chr22	37692048	37781556
TRIO_chr5_14138342_14515204	1/1	t0001	2167	117	38	28	34	2	13	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0002	2169	47	17	10	8	2	10	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0003	2167	9	4	2	0	2	1	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0004	2167	4	4	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0005	2167	3	3	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0006	2167	3	3	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0007	2167	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0008	2169	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0009	2167	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0010	2167	2	2	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204