JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIO_chr5_14138342_14515204	0/0	t0011	2169	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0012	2167	1	1	0	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0013	2167	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0014	2167	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0015	2169	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0016	2169	1	0	1	0	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIO_chr5_14138342_14515204	0/0	t0017	2167	1	0	0	1	0	0	copy fasta	TRIO	chr5	14138342	14515204
TRIP10_chr19_6734680_6756530	1/0	t0001	402	201	47	42	75	8	28	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/1	t0002	402	114	11	17	61	8	16	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0003	402	56	16	11	25	0	4	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0004	402	42	7	13	19	1	2	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0005	402	8	8	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0006	401	4	2	0	2	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0007	402	3	3	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0008	401	2	2	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0009	402	2	2	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0010	401	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0011	402	1	0	0	0	1	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0012	402	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0013	402	1	0	1	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0014	401	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0015	402	1	0	1	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0016	401	1	1	0	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0017	401	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0018	402	1	0	1	0	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP10_chr19_6734680_6756530	0/0	t0019	402	1	0	0	1	0	0	copy fasta	TRIP10	chr19	6734680	6756530
TRIP11_chr14_91960991_92045059	1/0	t0001	4057	82	5	27	37	6	6	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0002	4053	79	8	9	42	4	16	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0003	4057	29	7	9	8	3	2	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0004	4058	17	0	2	11	2	2	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0005	4071	11	7	3	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0006	4068	10	0	0	9	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0007	4069	9	0	0	8	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0008	4053	8	8	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/1	t0009	4070	7	4	1	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0010	4058	6	1	2	2	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0011	4070	6	0	0	6	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0012	4072	5	1	1	0	0	3	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0013	4040	5	5	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0014	4053	5	0	0	4	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0015	4057	5	5	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0016	4057	4	3	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0017	4057	4	0	0	4	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0018	4059	4	0	1	3	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0019	4072	3	3	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0020	4056	3	3	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0021	4057	3	1	1	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0022	4053	3	3	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0023	4057	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0024	4079	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059