JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIP11_chr14_91960991_92045059	0/0	t0025	4075	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0026	4073	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0027	4073	2	0	0	0	1	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0028	4056	2	1	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0029	4052	2	1	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0030	4074	2	1	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0031	4074	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0032	4058	2	2	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0033	4058	2	0	1	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0034	4057	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0035	4057	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0036	4058	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0037	4076	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0038	4085	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0039	4084	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0040	4080	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0041	4076	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0042	4052	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0043	4057	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0044	4056	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0045	4058	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0046	4057	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0047	4076	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0048	4071	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0049	4057	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0050	4072	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0051	4057	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0052	4053	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0053	4053	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0054	4053	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0055	4075	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0056	4075	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0057	4073	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0058	4082	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0059	4057	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0060	4057	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0061	4068	1	0	0	0	0	1	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0062	4074	1	0	1	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0063	4053	1	0	0	1	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0064	4057	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0065	4057	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0066	4057	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP11_chr14_91960991_92045059	0/0	t0067	4053	1	1	0	0	0	0	copy fasta	TRIP11	chr14	91960991	92045059
TRIP12_chr2_229758837_229927009	1/0	t0001	3897	155	39	25	63	5	22	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0002	3897	37	6	8	15	5	3	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0003	3897	36	1	10	16	2	7	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0004	3897	14	13	1	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0005	3898	13	3	3	3	0	4	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0006	3897	8	0	3	0	2	3	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/1	t0007	3897	7	0	1	4	1	0	copy fasta	TRIP12	chr2	229758837	229927009