JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIP12_chr2_229758837_229927009	0/0	t0008	3899	6	0	0	6	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0009	3896	6	6	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0010	3896	5	3	2	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0011	3897	5	5	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0012	3897	4	2	2	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0013	3898	3	0	2	0	0	1	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0014	3897	3	3	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0015	3897	3	3	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0016	3897	2	0	2	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0017	3897	2	0	0	2	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0018	3897	2	2	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0019	3897	2	2	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0020	3897	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0021	3898	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0022	3898	1	1	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0023	3898	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0024	3897	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0025	3897	1	1	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0026	3897	1	0	1	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0027	3897	1	1	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0028	3897	1	0	0	0	0	1	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0029	3897	1	0	1	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0030	3897	1	0	0	0	1	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0031	3897	1	0	0	0	0	1	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0032	3897	1	0	0	1	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0033	3897	1	0	1	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0034	3897	1	1	0	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0035	3897	1	0	1	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP12_chr2_229758837_229927009	0/0	t0036	3898	1	0	1	0	0	0	copy fasta	TRIP12	chr2	229758837	229927009
TRIP13_chr5_887884_923120	1/1	t0001	1133	268	30	48	140	14	34	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0002	1133	124	66	27	24	0	7	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0003	1133	2	0	1	0	1	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0004	1133	2	0	2	0	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0005	1133	2	0	0	0	0	2	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0006	1133	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0007	1133	1	0	0	1	0	0	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0008	1133	1	0	0	0	0	1	copy fasta	TRIP13	chr5	887884	923120
TRIP13_chr5_887884_923120	0/0	t0009	1133	1	0	0	0	1	0	copy fasta	TRIP13	chr5	887884	923120
TRIP4_chr15_64382836_64460303	1/1	t0001	268	215	91	32	40	14	36	copy fasta	TRIP4	chr15	64382836	64460303
TRIP4_chr15_64382836_64460303	0/0	t0002	268	5	5	0	0	0	0	copy fasta	TRIP4	chr15	64382836	64460303
TRIP6_chr7_100862387_100878454	1/0	t0001	263	381	68	60	196	14	42	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/1	t0002	263	25	2	10	6	1	5	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	t0003	263	17	16	1	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	t0004	263	3	3	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	t0005	263	2	2	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	t0006	263	2	0	1	0	1	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	t0007	263	1	0	0	0	0	1	copy fasta	TRIP6	chr7	100862387	100878454
TRIP6_chr7_100862387_100878454	0/0	t0008	263	1	1	0	0	0	0	copy fasta	TRIP6	chr7	100862387	100878454
TRIQK_chr8_92878534_92971144	1/1	t0001	3407	276	58	39	138	10	29	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0002	3407	17	11	0	5	1	0	copy fasta	TRIQK	chr8	92878534	92971144