JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIQK_chr8_92878534_92971144	0/0	t0003	3407	7	0	3	0	2	2	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0004	3407	6	0	0	6	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0005	3407	5	2	1	0	0	2	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0006	3407	5	4	1	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0007	3407	4	0	2	0	1	1	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0008	3407	3	3	0	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0009	3407	3	0	3	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0010	3407	2	0	0	2	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0011	3407	2	2	0	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0012	3407	2	2	0	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0013	3407	1	0	0	0	0	1	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0014	3407	1	0	0	1	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0015	3407	1	0	0	0	0	1	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0016	3407	1	1	0	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0017	3407	1	0	0	1	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0018	3407	1	0	0	1	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0019	3407	1	0	0	1	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0020	3407	1	0	1	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0021	3407	1	0	0	1	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIQK_chr8_92878534_92971144	0/0	t0022	3407	1	1	0	0	0	0	copy fasta	TRIQK	chr8	92878534	92971144
TRIR_chr19_12725640_12739684	1/1	t0001	349	259	89	63	70	10	25	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	t0002	349	2	1	1	0	0	0	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	t0003	349	1	0	0	0	0	1	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	t0004	349	1	1	0	0	0	0	copy fasta	TRIR	chr19	12725640	12739684
TRIR_chr19_12725640_12739684	0/0	t0005	349	1	1	0	0	0	0	copy fasta	TRIR	chr19	12725640	12739684
TRIT1_chr1_39833110_39888504	1/1	t0001	3648	146	36	23	65	5	15	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0002	3648	88	12	16	48	3	9	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0003	3645	47	5	3	39	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0004	3650	22	5	11	1	0	5	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0005	3648	21	0	1	20	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0006	3649	11	10	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0007	3648	7	6	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0008	3650	7	7	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0009	3650	4	4	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0010	3647	3	0	0	3	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0011	3649	3	3	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0012	3648	2	0	0	0	0	2	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0013	3650	2	2	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0014	3648	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0015	3648	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0016	3648	1	1	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0017	3648	1	0	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0018	3648	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0019	3650	1	0	0	0	0	1	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0020	3648	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0021	3648	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0022	3648	1	1	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0023	3648	1	1	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0024	3648	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0025	3644	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504