JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRIT1_chr1_39833110_39888504	0/0	t0026	3648	1	0	1	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0027	3648	1	1	0	0	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRIT1_chr1_39833110_39888504	0/0	t0028	3645	1	0	0	1	0	0	copy fasta	TRIT1	chr1	39833110	39888504
TRMO_chr9_97899489_97927500	0/0	t0001	252	241	51	30	128	9	23	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	1/1	t0002	252	121	27	44	20	9	19	copy fasta	TRMO	chr9	97899489	97927500
TRMO_chr9_97899489_97927500	0/0	t0003	252	12	0	0	12	0	0	copy fasta	TRMO	chr9	97899489	97927500
TRMT10A_chr4_99541711_99569039	1/1	t0001	2528	204	46	32	100	0	24	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0002	2528	71	16	5	49	0	1	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0003	2529	64	17	8	26	0	13	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0004	2528	9	4	5	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0005	2528	7	2	5	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0006	2529	7	0	0	6	0	1	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0007	2528	6	2	4	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0008	2528	4	2	2	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0009	2527	3	3	0	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0010	2528	1	0	1	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0011	2528	1	0	1	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0012	2528	1	0	1	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0013	2528	1	1	0	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0014	2529	1	0	0	1	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0015	2529	1	0	1	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0016	2528	1	1	0	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0017	2529	1	0	0	0	0	1	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10A_chr4_99541711_99569039	0/0	t0018	2528	1	0	1	0	0	0	copy fasta	TRMT10A	chr4	99541711	99569039
TRMT10B_chr9_37748805_37783972	1/1	t0001	1343	299	40	66	143	11	37	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0002	1343	25	3	5	12	1	4	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0003	1343	9	8	0	0	0	1	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0004	1343	7	6	1	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0005	1338	6	0	3	0	2	1	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0006	1344	6	2	1	2	0	1	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0007	1343	5	5	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0008	1343	5	4	1	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0009	1340	5	5	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0010	1340	5	5	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0011	1343	3	0	3	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0012	1343	2	0	0	2	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0013	1343	2	1	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0014	1343	1	1	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0015	1343	1	1	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0016	1343	1	1	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0017	1343	1	0	1	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0018	1343	1	0	1	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0019	1343	1	1	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0020	1343	1	0	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0021	1343	1	1	0	0	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10B_chr9_37748805_37783972	0/0	t0022	1343	1	0	0	1	0	0	copy fasta	TRMT10B	chr9	37748805	37783972
TRMT10C_chr3_101556868_101571446	1/0	t0001	602	323	77	67	125	13	40	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0002	602	65	1	10	49	3	2	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0003	602	15	0	0	15	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0004	602	12	12	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446