JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT10C_chr3_101556868_101571446	0/0	t0005	602	3	0	0	3	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0006	602	2	1	1	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0007	602	2	0	0	2	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0008	602	2	2	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0009	602	1	0	1	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0010	602	1	0	0	0	0	1	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0011	602	1	0	1	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0012	602	1	0	0	0	0	1	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT10C_chr3_101556868_101571446	0/0	t0013	602	1	1	0	0	0	0	copy fasta	TRMT10C	chr3	101556868	101571446
TRMT112_chr11_64311460_64322559	1/1	t0001	435	323	68	69	134	12	38	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0002	435	45	19	0	20	0	6	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0003	435	3	3	0	0	0	0	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0004	435	2	2	0	0	0	0	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0005	435	2	0	0	2	0	0	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0006	435	1	0	0	1	0	0	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0007	435	1	0	1	0	0	0	copy fasta	TRMT112	chr11	64311460	64322559
TRMT112_chr11_64311460_64322559	0/0	t0008	435	1	0	0	1	0	0	copy fasta	TRMT112	chr11	64311460	64322559
TRMT11_chr6_125981540_126044276	1/1	t0001	452	190	85	37	30	12	24	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	t0002	452	1	1	0	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT11_chr6_125981540_126044276	0/0	t0003	452	1	0	1	0	0	0	copy fasta	TRMT11	chr6	125981540	126044276
TRMT12_chr8_124445820_124458026	1/0	t0001	861	185	23	37	94	13	17	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	t0002	861	86	22	4	41	1	18	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	t0003	861	55	8	5	37	0	5	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/1	t0004	860	36	7	14	9	2	3	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	t0005	861	22	19	2	0	0	1	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	t0006	861	16	6	3	1	2	4	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	t0007	860	4	3	1	0	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT12_chr8_124445820_124458026	0/0	t0008	861	2	0	0	2	0	0	copy fasta	TRMT12	chr8	124445820	124458026
TRMT13_chr1_100128163_100155496	1/1	t0001	1683	313	69	68	124	13	37	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0002	1683	32	10	3	16	1	2	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0003	1683	5	5	0	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0004	1683	2	2	0	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0005	1683	2	1	0	0	0	1	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0006	1683	1	1	0	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0007	1683	1	1	0	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0008	1683	1	1	0	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT13_chr1_100128163_100155496	0/0	t0009	1683	1	0	1	0	0	0	copy fasta	TRMT13	chr1	100128163	100155496
TRMT1L_chr1_185113101_185161953	1/1	t0001	2160	136	23	33	56	5	17	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0002	2160	67	20	21	15	2	9	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0003	2159	50	14	9	25	0	2	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0004	2166	49	0	6	41	1	1	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0005	2160	23	15	1	6	0	1	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0006	2159	11	11	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0007	2160	9	8	1	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0008	2160	6	0	3	1	2	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0009	2159	5	0	0	5	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0010	2160	1	0	0	1	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0011	2160	1	0	1	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0012	2160	1	1	0	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0013	2160	1	0	1	0	0	0	copy fasta	TRMT1L	chr1	185113101	185161953