JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT1L_chr1_185113101_185161953	0/0	t0014	2167	1	0	0	1	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1L_chr1_185113101_185161953	0/0	t0015	2166	1	0	0	1	0	0	copy fasta	TRMT1L	chr1	185113101	185161953
TRMT1_chr19_13099907_13121740	1/1	t0001	149	361	86	79	130	16	48	copy fasta	TRMT1	chr19	13099907	13121740
TRMT1_chr19_13099907_13121740	0/0	t0002	149	13	12	1	0	0	0	copy fasta	TRMT1	chr19	13099907	13121740
TRMT2A_chr22_20106875_20122226	1/0	t0001	1009	358	70	49	190	16	32	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0002	1009	36	14	1	19	0	2	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/1	t0003	1009	22	0	10	0	2	9	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0004	1007	8	8	0	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0005	1009	5	3	2	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0006	1009	3	3	0	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0007	990	2	0	1	0	0	1	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0008	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0009	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0010	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0011	1009	1	0	1	0	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0012	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0013	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0014	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2A_chr22_20106875_20122226	0/0	t0015	1009	1	0	0	1	0	0	copy fasta	TRMT2A	chr22	20106875	20122226
TRMT2B_chrX_101004350_101057111	1/0	t0001	2033	136	13	23	79	4	16	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/1	t0002	2032	68	34	11	6	5	11	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0003	2035	14	0	8	2	0	4	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0004	2032	8	8	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0005	2032	7	7	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0006	2034	6	0	0	6	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0007	2032	6	2	0	3	0	1	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0008	2032	3	2	1	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0009	2033	2	0	0	2	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0010	2028	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0011	2033	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0012	2032	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0013	2033	1	0	1	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0014	2031	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0015	2033	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0016	2032	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0017	2032	1	0	1	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0018	2033	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0019	2033	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0020	2032	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0021	2035	1	0	0	1	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0022	2032	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT2B_chrX_101004350_101057111	0/0	t0023	2032	1	1	0	0	0	0	copy fasta	TRMT2B	chrX	101004350	101057111
TRMT44_chr4_8435777_8481555	1/1	t0001	601	402	91	64	189	14	42	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	t0002	601	4	0	2	0	0	2	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	t0003	601	3	3	0	0	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT44_chr4_8435777_8481555	0/0	t0004	601	1	0	0	1	0	0	copy fasta	TRMT44	chr4	8435777	8481555
TRMT5_chr14_60966441_60986079	0/0	t0001	3773	100	37	9	33	8	13	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0002	3773	98	5	12	71	2	8	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	1/0	t0003	3775	81	11	8	50	0	11	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/1	t0004	3775	61	6	14	29	4	7	copy fasta	TRMT5	chr14	60966441	60986079