JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT5_chr14_60966441_60986079	0/0	t0005	3776	17	2	10	0	2	3	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0006	3776	10	0	0	10	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0007	3774	4	3	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0008	3775	2	2	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0009	3775	2	0	0	2	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0010	3775	2	1	1	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0011	3775	2	2	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0012	3775	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0013	3775	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0014	3775	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0015	3774	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0016	3773	1	0	1	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0017	3776	1	0	1	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0018	3773	1	0	0	0	0	1	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0019	3774	1	0	0	0	0	1	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0020	3776	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0021	3773	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0022	3773	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0023	3773	1	0	0	1	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT5_chr14_60966441_60986079	0/0	t0024	3775	1	1	0	0	0	0	copy fasta	TRMT5	chr14	60966441	60986079
TRMT61A_chr14_103524196_103542073	0/0	t0001	2348	144	21	38	57	7	21	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/1	t0002	2348	77	10	19	27	5	15	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0003	2348	70	5	16	37	3	9	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	1/0	t0004	2348	25	21	1	1	0	1	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0005	2348	21	0	0	21	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0006	2348	18	0	0	17	0	1	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0007	2348	10	0	0	10	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0008	2348	8	0	1	7	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0009	2348	7	7	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0010	2348	7	7	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0011	2348	5	1	3	0	0	1	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0012	2348	5	5	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0013	2348	4	3	1	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0014	2348	4	0	0	4	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0015	2348	3	0	1	1	1	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0016	2348	3	3	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0017	2348	2	2	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0018	2348	2	0	0	2	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0019	2347	2	2	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0020	2348	2	1	1	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0021	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0022	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0023	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0024	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0025	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0026	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0027	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0028	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0029	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0030	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073