JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT61A_chr14_103524196_103542073	0/0	t0031	2347	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0032	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0033	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0034	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0035	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0036	2348	1	1	0	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0037	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0038	2348	1	0	0	1	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61A_chr14_103524196_103542073	0/0	t0039	2348	1	0	1	0	0	0	copy fasta	TRMT61A	chr14	103524196	103542073
TRMT61B_chr2_28844821_28875309	1/1	t0001	411	359	85	72	144	18	38	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT61B_chr2_28844821_28875309	0/0	t0002	411	1	1	0	0	0	0	copy fasta	TRMT61B	chr2	28844821	28875309
TRMT6_chr20_5932228_5955533	0/1	t0001	1436	143	10	29	78	9	16	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0002	1436	74	37	12	18	1	6	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0003	1436	73	11	7	50	1	4	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	1/0	t0004	1436	37	13	12	0	5	6	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0005	1436	35	5	10	10	0	10	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0006	1436	26	10	3	12	0	1	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0007	1436	6	3	0	3	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0008	1436	4	0	3	0	1	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0009	1436	4	0	0	0	0	4	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0010	1436	3	0	0	3	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0011	1436	3	0	3	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0012	1436	3	3	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0013	1436	2	0	0	2	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0014	1436	2	2	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0015	1436	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0016	1436	1	0	0	0	1	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0017	1436	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0018	1457	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0019	1436	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0020	1436	1	1	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0021	1436	1	1	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0022	1436	1	0	1	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0023	1436	1	1	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0024	1436	1	1	0	0	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0025	1436	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0026	1436	1	0	0	0	0	1	copy fasta	TRMT6	chr20	5932228	5955533
TRMT6_chr20_5932228_5955533	0/0	t0027	1436	1	0	0	1	0	0	copy fasta	TRMT6	chr20	5932228	5955533
TRMT9B_chr8_12940673_13034777	0/1	t0001	8246	36	1	5	23	2	4	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0002	8230	25	5	3	9	0	8	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0003	8238	19	0	1	18	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0004	8229	16	1	0	14	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0005	8241	16	0	2	6	1	7	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0006	8239	12	0	3	5	0	4	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0007	8246	11	0	3	8	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0008	8246	8	0	3	5	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0009	8228	5	5	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0010	8242	4	0	2	0	1	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0011	8240	4	4	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0012	8245	4	0	0	4	0	0	copy fasta	TRMT9B	chr8	12940673	13034777