Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BTN1A1_chr6_26495303_26515425	0/0	t0007	1365	5	4	1	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0008	1364	2	1	1	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0009	1365	2	0	0	2	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0010	1365	2	2	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0011	1364	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0012	1364	1	0	0	1	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0013	1365	1	1	0	0	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0014	1365	1	0	0	1	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0015	1365	1	0	0	1	0	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	t0016	1365	1	0	0	0	1	0	copy fasta	BTN1A1	chr6	26495303	26515425
BTN2A1_chr6_26452955_26474637	0/1	t0001	1307	289	34	42	175	14	23	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0002	1304	63	41	7	15	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	1/0	t0003	1307	31	2	17	1	1	9	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0004	1307	8	3	1	1	1	2	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0005	1307	6	5	1	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0006	1307	4	0	0	4	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0007	1307	4	0	3	1	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0008	1307	3	3	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0009	1307	3	0	2	0	0	1	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0010	1307	2	2	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0011	1304	1	0	0	1	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0012	1304	1	1	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0013	1307	1	0	0	1	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0014	1307	1	0	0	1	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0015	1307	1	1	0	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0016	1307	1	0	0	0	0	1	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	t0017	1307	1	0	1	0	0	0	copy fasta	BTN2A1	chr6	26452955	26474637
BTN2A2_chr6_26378108_26399874	1/1	t0001	2012	235	23	43	126	9	32	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0002	2012	57	37	8	12	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0003	2012	40	12	15	2	1	10	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0004	2012	11	0	3	8	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0005	2012	8	0	0	8	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0006	2012	5	5	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0007	2012	4	2	1	0	1	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0008	2012	4	0	2	1	1	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0009	2012	3	0	0	1	0	2	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0010	2012	3	3	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0011	2013	3	3	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0012	2012	2	2	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0013	2012	2	0	0	2	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0014	2012	2	0	1	1	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0015	2012	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0016	2012	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0017	2012	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0018	2012	1	0	0	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0019	2012	1	0	0	1	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0020	2012	1	0	0	0	0	1	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0021	2012	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0022	2012	1	1	0	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	t0023	2012	1	0	1	0	0	0	copy fasta	BTN2A2	chr6	26378108	26399874