JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT9B_chr8_12940673_13034777	0/0	t0013	8247	4	0	2	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0014	8243	3	0	3	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0015	8230	3	0	0	2	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0016	8244	3	0	0	3	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0017	8246	3	0	1	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0018	8246	3	3	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0019	8245	3	0	1	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0020	8246	3	0	0	3	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0021	8246	3	0	0	3	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0022	8244	3	0	1	0	1	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0023	8243	3	3	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0024	8240	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0025	8241	2	0	2	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0026	8248	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0027	8230	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0028	8229	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0029	8239	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0030	8242	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0031	8238	2	0	1	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0032	8228	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0033	8246	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0034	8247	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0035	8229	2	0	0	0	1	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0036	8229	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0037	8233	2	0	1	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0038	8233	2	1	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0039	8242	2	0	1	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0040	8243	2	1	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0041	8233	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0042	8249	2	0	2	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0043	8245	2	0	0	0	0	2	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0044	8246	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0045	8246	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0046	8245	2	0	1	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0047	8246	2	0	2	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0048	8241	2	0	1	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0049	8241	2	0	1	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0050	8245	2	0	0	2	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0051	8230	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0052	8230	2	2	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0053	8230	2	0	2	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0054	8241	1	0	0	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0055	8230	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0056	8241	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0057	8234	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0058	8233	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0059	8229	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0060	8247	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0061	8247	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0062	8234	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777