JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT9B_chr8_12940673_13034777	1/0	t0063	8226	1	0	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0064	8242	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0065	8238	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0066	8225	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0067	8238	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0068	8230	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0069	8238	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0070	8239	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0071	8226	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0072	8238	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0073	8230	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0074	8239	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0075	8241	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0076	8227	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0077	8239	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0078	8239	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0079	8230	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0080	8240	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0081	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0082	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0083	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0084	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0085	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0086	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0087	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0088	8243	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0089	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0090	8231	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0091	8239	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0092	8239	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0093	8239	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0094	8239	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0095	8240	1	0	0	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0096	8239	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0097	8243	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0098	8246	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0099	8227	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0100	8228	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0101	8228	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0102	8229	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0103	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0104	8241	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0105	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0106	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0107	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0108	8231	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0109	8246	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0110	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0111	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0112	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777