JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT9B_chr8_12940673_13034777	0/0	t0113	8241	1	0	0	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0114	8232	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0115	8229	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0116	8241	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0117	8229	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0118	8229	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0119	8243	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0120	8229	1	0	0	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0121	8241	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0122	8242	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0123	8234	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0124	8230	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0125	8243	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0126	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0127	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0128	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0129	8233	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0130	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0131	8230	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0132	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0133	8275	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0134	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0135	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0136	8247	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0137	8245	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0138	8245	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0139	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0140	8246	1	0	0	0	1	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0141	8244	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0142	8244	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0143	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0144	8237	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0145	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0146	8237	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0147	8246	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0148	8233	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0149	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0150	8245	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0151	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0152	8248	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0153	8247	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0154	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0155	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0156	8246	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0157	8247	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0158	8246	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0159	8249	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0160	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0161	8245	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0162	8247	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777