JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRMT9B_chr8_12940673_13034777	0/0	t0163	8241	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0164	8233	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0165	8229	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0166	8229	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0167	8230	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0168	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0169	8240	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0170	8241	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0171	8244	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0172	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0173	8243	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0174	8234	1	0	0	0	0	1	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0175	8243	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0176	8228	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0177	8229	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0178	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0179	8246	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0180	8242	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0181	8229	1	0	1	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0182	8244	1	1	0	0	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMT9B_chr8_12940673_13034777	0/0	t0183	8246	1	0	0	1	0	0	copy fasta	TRMT9B	chr8	12940673	13034777
TRMU_chr22_46330714_46362340	1/1	t0001	386	216	19	42	111	11	31	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0002	386	54	38	11	0	3	2	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0003	386	16	15	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0004	386	3	2	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0005	386	3	3	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0006	384	3	3	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0007	386	2	2	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0008	386	2	0	0	2	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0009	386	1	1	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0010	386	1	0	1	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0011	386	1	1	0	0	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0012	386	1	0	0	0	0	1	copy fasta	TRMU	chr22	46330714	46362340
TRMU_chr22_46330714_46362340	0/0	t0013	386	1	0	0	1	0	0	copy fasta	TRMU	chr22	46330714	46362340
TRNAU1AP_chr1_28548085_28583545	1/1	t0001	936	225	80	51	51	10	31	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	t0002	940	68	11	23	15	8	11	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	t0003	940	1	0	0	0	0	1	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	t0004	936	1	1	0	0	0	0	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNAU1AP_chr1_28548085_28583545	0/0	t0005	936	1	0	0	0	0	1	copy fasta	TRNAU1AP	chr1	28548085	28583545
TRNP1_chr1_26988692_27005886	1/1	t0001	1278	261	71	60	79	18	31	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0002	1278	9	9	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0003	1278	2	0	0	2	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0004	1278	2	2	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0005	1278	2	2	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0006	1278	2	2	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0007	1278	2	2	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0008	1278	1	0	0	0	0	1	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0009	1278	1	1	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0010	1278	1	0	0	1	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0011	1278	1	1	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886