JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TRNP1_chr1_26988692_27005886	0/0	t0012	1278	1	1	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0013	1278	1	0	1	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0014	1278	1	1	0	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNP1_chr1_26988692_27005886	0/0	t0015	1278	1	0	1	0	0	0	copy fasta	TRNP1	chr1	26988692	27005886
TRNT1_chr3_3121940_3154023	0/0	t0001	967	165	10	18	116	2	19	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/1	t0002	967	81	14	24	28	6	8	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0003	948	52	9	21	10	3	9	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	1/0	t0004	948	22	20	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0005	968	18	3	7	2	0	6	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0006	963	12	3	0	8	1	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0007	971	7	4	1	0	0	2	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0008	948	5	5	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0009	971	5	5	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0010	968	5	4	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0011	967	4	0	0	4	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0012	967	4	0	0	4	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0013	967	3	3	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0014	948	3	3	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0015	948	3	3	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0016	952	2	1	1	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0017	963	2	0	2	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0018	948	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0019	952	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0020	948	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0021	967	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0022	967	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0023	948	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0024	967	1	0	0	1	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0025	967	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TRNT1_chr3_3121940_3154023	0/0	t0026	963	1	1	0	0	0	0	copy fasta	TRNT1	chr3	3121940	3154023
TROAP_chr12_49318255_49336731	1/1	t0001	215	249	83	38	82	11	33	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0002	215	17	0	0	17	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0003	216	11	9	2	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0004	216	6	1	1	2	1	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0005	215	3	0	2	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0006	216	3	3	0	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0007	215	1	0	1	0	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0008	215	1	0	0	1	0	0	copy fasta	TROAP	chr12	49318255	49336731
TROAP_chr12_49318255_49336731	0/0	t0009	215	1	0	0	0	0	1	copy fasta	TROAP	chr12	49318255	49336731
TRO_chrX_54915824_54936431	1/1	t0001	339	299	70	52	133	11	31	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	t0002	339	6	6	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	t0003	339	3	3	0	0	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	t0004	338	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRO_chrX_54915824_54936431	0/0	t0005	342	1	0	0	1	0	0	copy fasta	TRO	chrX	54915824	54936431
TRPA1_chr8_72016250_72080584	0/1	t0001	1832	115	19	16	71	3	5	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0002	1832	90	0	7	68	5	10	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0003	1835	48	3	16	22	1	6	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	1/0	t0004	1832	34	6	8	8	2	9	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0005	1832	24	21	3	0	0	0	copy fasta	TRPA1	chr8	72016250	72080584
TRPA1_chr8_72016250_72080584	0/0	t0006	1832	16	5	6	0	1	4	copy fasta	TRPA1	chr8	72016250	72080584